Fall 2019 - MBB 761 G100

Comparative Genomics (3)

Class Number: 1981

Delivery Method: In Person

Overview

  • Course Times + Location:

    Tu, Th 2:30 PM – 4:20 PM
    SECB 1010, Burnaby

  • Prerequisites:

    MBB 331.

Description

CALENDAR DESCRIPTION:

Examination of the fundamentals of comparative genomics, identification and activity of functional elements in genomes, inter- and intra-species comparisons, relationship of genomic to phenotypic variation, and personalized genomics are among the topics to be explored. Comparison of genome data has impacts on medicine and many other fields of the life sciences.

COURSE DETAILS:

Module 1: Fundamentals
Lecture 1: Comparative genomics: an emerging field
Lecture 2: DNA sequencing technologies: the driving force
Lecture 3: Bioinformatics: the enabling force
Lecture 4: Resources for comparative genomics
Lecture 5: The Human Genome Project

Module 2: Functional elements: identification and function
Lecture 6: Gene
Lecture 7: Ultraconserved elements
Lecture 8: Functional elements: cis-regulatory elements
Lecture 9: ENCODE & MOD-ENCODE projects Lecture
10: Synteny blocks Lecture
11: Genome rearrangement events and genome evolution

Module 3: Intra-species comparison
Lecture 12: Genomic variations
Lecture 13: From SNP to HapMap
Lecture 14: Structural variations
Lecture 15: Loss-of-function variations
Lecture 16: Exome sequencing
Lecture 17: Personalized genomes and The 1000 Genome Project

Module 4: Inter-species comparison
Lecture 18: Genome family expansion and contraction
Lecture 19: Transcription factor and gene battery
Lecture 20: Horizontal gene transfer
Lecture 21: Virulence factors and drug targets
Lecture 22: Metagenomics
Lecture 23: What makes us human?
Lecture 24: The Genome 10K Project

Grading

  • Quizzes 20%
  • Presentation 30%
  • Participation 10%
  • Report 40%

Graduate Studies Notes:

Important dates and deadlines for graduate students are found here: http://www.sfu.ca/dean-gradstudies/current/important_dates/guidelines.html. The deadline to drop a course with a 100% refund is the end of week 2. The deadline to drop with no notation on your transcript is the end of week 3.

Registrar Notes:

SFU’s Academic Integrity web site http://www.sfu.ca/students/academicintegrity.html is filled with information on what is meant by academic dishonesty, where you can find resources to help with your studies and the consequences of cheating.  Check out the site for more information and videos that help explain the issues in plain English.

Each student is responsible for his or her conduct as it affects the University community.  Academic dishonesty, in whatever form, is ultimately destructive of the values of the University. Furthermore, it is unfair and discouraging to the majority of students who pursue their studies honestly. Scholarly integrity is required of all members of the University. http://www.sfu.ca/policies/gazette/student/s10-01.html

ACADEMIC INTEGRITY: YOUR WORK, YOUR SUCCESS