Simon Fraser University
Engaging the World

Course Outlines

Fall 2021 - STAT 440 E100

Learning from Big Data (3)

Class Number: 5079

Delivery Method: In Person

Overview

  • Course Times + Location:

    Sep 8 – Dec 7, 2021: Mon, 4:30–5:20 p.m.
    Burnaby

    Sep 8 – Dec 7, 2021: Wed, 4:30–6:20 p.m.
    Burnaby

  • Prerequisites:

    90 units including STAT 350 with a minimum grade of C- and one of STAT 341, STAT 260, or CMPT 225, with a minimum grade of C-, or instructor approval. STAT 240 is also recommended.

Description

CALENDAR DESCRIPTION:

A data-first discovery of advanced statistical methods. Focus will be on a series of forecasting and prediction competitions, each based on a large real-world dataset. Additionally, practical tools for statistical modeling in real-world environments will be explored.

COURSE DETAILS:

STAT 440 is suitable for senior students who have a minimum of 90 units.

Calendar Description:

A mixed lecture and seminar-based course to introduce Statistics graduate students to theory, models and methods in Genetics and Genomics. Topics include genome-wide association study, the ancestral recombination graph, population genetics, differential privacy, whole genome sequencing, computational molecular genetics, evolution and selection, phenotype prediction.

Course Outline

The course will be split into several modules. Each module will focus on a particular dataset. At the start of each module, students will be randomly divided into teams. A subset of the dataset will be given to all teams (the training data) and the rest of the dataset will be withheld (the test data). Students will learn modern machine learning methods for predicting aspects of the test data based on the training data. This test/train paradigm is often encountered in both academic and industrial settings. The methods will include bagging, boosting, deep learning, model blending and cross-validation. The students will learn how to implement these methods using standard software packages such as scikit-learn and tensorflow.They will use these methods (and any other techniques they wish) to predict aspects of the test data. During each module, teams will submit their predictions and see the results of those predictions on the withheld test data. Marks for competition results will be awarded based on the accuracy of their predictions.

Mode of Teaching:
  • Lecture: Synchronous (Live)
  • Tutorial: Synchronous (Live)
  • Quizzes and Midterm: No midterm exam.
  • Final exam: No final exam.
  • Remote invigilation will not be used.

Grading

  • Competition Results 50%
  • Competition Writeups 30%
  • Homework 20%

NOTES:

Assignments and Grading Procedures

  • Competition Results (50%): The course’s modules will be held as competitions. Students will be randomly divided into teams at the start of each module. Half of the marks for competition results will be awarded based on a team’s performance relative to other teams, and the other half will be awarded based on a team's performance relative to objective baselines.

  • Competition Writeups (30%): At the end of each module, each team will provide a short report describing their code, methods and thought processes.

  • Homework (20%): Problem sets will be assigned (to be done individually) following the methods taught in the lectures.


Above Grading is subject to change.

Materials

RECOMMENDED READING:

Hands-On Machine Learning with Scikit-Learn and TensorFlow: Concepts, Tools, and Techniques to Build Intelligent Systems (A. Géron, 2017, O'Reilly)

Deep Learning (I. Goodfellow and Y. Bengio and A. Courville, 2016, MIT Press)

Machine Learning: A Probabilistic Perspective (K.P. Murphy, 2012, MIT Press); Elements of Statistical Learning (T. Hastie, R. Tibshirani and J. Friedman, 2009, Springer)

Introduction to Machine Learning with Python (A. Müller and S. Guido, 2016, O'Rielly)

Linear Algebra, 5th Edition (S. Friedberg, A. Insel and L. Spence, 2018, Pearson)

Learning R (R. Cotton, 2013, O'Reilly)

Information Theory, Inference, and Learning Algorithms (D. MacKay, 2003, Cambridge University Press)

Department Undergraduate Notes:

Students with Disabilities:
Students requiring accommodations as a result of disability must contact the Centre for Accessible Learning 778-782-3112 or csdo@sfu.ca


Tutor Requests:
Students looking for a tutor should visit hhttps://www.sfu.ca/stat-actsci/all-students/other-resources/tutoring.html. We accept no responsibility for the consequences of any actions taken related to tutors.

Registrar Notes:

ACADEMIC INTEGRITY: YOUR WORK, YOUR SUCCESS

SFU’s Academic Integrity web site http://www.sfu.ca/students/academicintegrity.html is filled with information on what is meant by academic dishonesty, where you can find resources to help with your studies and the consequences of cheating.  Check out the site for more information and videos that help explain the issues in plain English.

Each student is responsible for his or her conduct as it affects the University community.  Academic dishonesty, in whatever form, is ultimately destructive of the values of the University. Furthermore, it is unfair and discouraging to the majority of students who pursue their studies honestly. Scholarly integrity is required of all members of the University. http://www.sfu.ca/policies/gazette/student/s10-01.html

TEACHING AT SFU IN FALL 2021

Teaching at SFU in fall 2021 will involve primarily in-person instruction, with approximately 70 to 80 per cent of classes in person/on campus, with safety plans in place.  Whether your course will be in-person or through remote methods will be clearly identified in the schedule of classes.  You will also know at enrollment whether remote course components will be “live” (synchronous) or at your own pace (asynchronous).

Enrolling in a course acknowledges that you are able to attend in whatever format is required.  You should not enroll in a course that is in-person if you are not able to return to campus, and should be aware that remote study may entail different modes of learning, interaction with your instructor, and ways of getting feedback on your work than may be the case for in-person classes.

Students with hidden or visible disabilities who may need class or exam accommodations, including in the context of remote learning, are advised to register with the SFU Centre for Accessible Learning (caladmin@sfu.ca or 778-782-3112) as early as possible in order to prepare for the fall 2021 term.