Nansheng J. Chen

Jack Chen, Associate Professor

Department of Molecular Biology and Biochemistry
Simon Fraser University

Office: SSB8111
Phone: (778)782-4823
Email: chenn(at)sfu.ca

B.Sc., Fudan University, Shanghai
Ph.D., Chinese Academy of Sciences, Qingdao


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ABC transporter genes: annotation, evolution, and function

Review articles

  1. Wilkens, 2015. Structure and mechanism of ABC transporters. (F1000Prime Reports)
  2. Puljung, 2015. New structural insights into the gating movements of CFTR. (JGP)
  3. Geisler, 2014. Plant ABC Transporters. (SpringerLink)
  4. Beek et al., 2014. Structural diversity of ABC transporters. (JGP)
  5. Luckenback et al., 2014. Current advances on ABC drug transporters in fish. (Comparative Biochemistry and PHysiology Part C: Toxicology & Pharmacology)
  6. Dermauw and Van Leeuwen, 2014. The ABC gene family in arthropods: Comparative genomics and role in insecticide transport and resistance. (Insect Biochemistry and Molecular Biology)
  7. Greenberg, 2014. Schistosome ABC multidrug transporters: From pharmacology to physiology. (International Journal for Parasitology: Drugs and Drug Resistance)
  8. Ardelli, 2013. Transport proteins of the ABC systems superfamily and their role in drug action and resistance in nematodes. (Parasitology International)
  9. Greenberg, 2013. ABC multidrug transporters in schistosomes and other parasitic flatworms. (Parasitology International)
  10. Kang et al., 2011. Plant ABC Transporters. (Plant ABC Transporters)
  11. Rees et al., 2009. ABC transporters: the power to change. (Nature Reviews Molecular Cell Biology)
  12. Verrier et al., 2008. Plant ABC proteins a unified nomenclature and updated inventory. (Trends in Plant Science)
  13. Gadsby et al., 2006. The ABC protein turned chloride channel whose failure causes cystic fibrosis. (Nature)
  14. Dean and Annilo, 2005. Evolution of the Atp-Binding Cassette (ABC) transporter superfamily in vertebrates. (Annu. Rev. Genomics Hum. Genet.)
  15. Jones and George, 2004. The ABC transporter structure and mechanism: perspectives on recent research. (Cellular and Molecular Life Sciences)
  16. Gottesman et al., 2002. Multidrug resistance in cancer: role of ATPdependent transporters. (Nature Reviews Cancer)
  17. Borst and Elferink, 2002. Mammalian ABC transporters in health and disease. (Annual REview of Biochemistry)
  18. Martinoia et al., 2002. Multifunctionality of plant ABC transporters more than just detoxifiers. (Planta)
  19. Decottignies and Goffeau, 1997. Complete inventory of the yeast ABC proteins. (Nature Genetics)

Research articles: birds

  1. Annilo et al., 2006. Evolution of the vertebrate ABC gene family: Analysis of gene birth and death. (Genomics)

Research articles: nematodes

  1. Markov et al., 2014. The Same or Not the Same: Lineage-Specific Gene Expansions and Homology Relationships in Multigene Families in Nematodes. (Journal of Molecular Evolution)
  2. Ardelli et al., 2010. Inventory and analysis of ATP-binding cassette (ABC) systems in Brugia malayi. (Parasitology)
  3. Dieterich et al., 2008. The Pristionchus pacificus genome provides a unique perspective on nematode lifestyle and parasitism. (Nature Genetics)
    Notes: A large set of putative ABC transporter genes were reported in this study, which was proven to be inaccurate.
  4. Zhao et al., 2007. Comparative Genomics and Adaptive Selection of the ATP-Binding-Cassette Gene Family in Caenorhabditis Species. (Genetics)
  5. Sheps et al., 2004. The ABC transporter gene family of Caenorhabditis elegans has implications for the evolutionary dynamics of multidrug resistance in eukaryotes. (Genome Biology)

Research articles: flies (Arthropoda)

  1. Jeong et al., 2014. Genome-wide identification of whole ATP-binding cassette (ABC) transporters in the intertidal copepod Tigriopus japonicus. (BMC Genomics)
  2. Broehan et al., 2013. Functional analysis of the ATP-binding cassette (ABC) transporter gene family of Tribolium castaneum. (BMC Genomics)
  3. Dermauw et al., 2013. A burst of ABC genes in the genome of the polyphagous spider mite Tetranychus urticae. (BMC Genomics)
  4. Bariami et al., 2012. Gene Amplification, ABC Transporters and Cytochrome P450s: Unraveling the Molecular Basis of Pyrethroid Resistance in the Dengue Vector, Aedes aegypti. (PLoS Neglected Tropical Diseases)
  5. Sturm et al., 2009. The ABC transporter gene family of Daphnia pulex. (BMC Genomics)
  6. Adams et al., 2000. The Genome Sequence of Drosophila melanogaster. (Science)
    Notes: This genome sequencing project paper reported a set of 48 ABC transporter genes in D. melanogaster. However, details were not provided.

Research articles: others

  1. Tran et al., 2014. A female gametocyte-specific ABC transporter plays a role in lipid metabolism in the malaria parasite. (Nature Communications)
  2. Cakir and Kilickaya, 2013. Whole-Genome Survey of the Putative ATP-Binding Cassette Transporter Family Genes in Vitis vinifera. (PLoS ONE)
    Notes: 135 putative ABC transporter geenes belong to 13 subfamilies were identified in the common grape.
  3. Kim et al., 2013. Genome-scale analysis of ABC transporter genes and characterization of the ABCC type transporter genes in Magnaporthe oryzae. (Genomics)
    Notes: 50 ABC transporter genes of 11 subfamllies were identified.
  4. Liu et al., 2013. Genome-Wide Identification, Characterization and Phylogenetic Analysis of 50 Catfish ATP-Binding Cassette (ABC) Transporter Genes. (PLoS ONE)
  5. Kovalchuk and Driessen, 2010. Phylogenetic analysis of fungal ABC transporters. (BMC Genomics)
  6. Paumi et al., 2009. ABC Transporters in Saccharomyces cerevisiae and Their Interactors: New Technology Advances the Biology of the ABCC (MRP) Subfamily
  7. Borycz et al., 2008. Drosophila ABC transporter mutants white, brown and scarlet have altered contents and distribution of biogenic amines in the brain. (The Journal of Experimental Biology)
  8. Annilo et al., 2006. Evolution of the vertebrate ABC gene family: Analysis of gene birth and death. (Genomics)