Robert C. Johnsen Publications

REFEREED JOURNAL PUBLICATIONS

Mah AK, Armstrong KR, Chew DS, Chu JS, Tu DK, Johnsen RC, Chen NS, Chamberlin HM, Baillie DL ( 2007) Transcriptional Regulation Of AQP-8, A Caenorhabditis elegans Aquaporin Exclusively Expressed In The Excretory System, By The POU Homeobox Transcription Factor CEH-6. In Press. J Biol Chem. (Full text)

R. Hunt-Newbury, R. Viveriros, R. Johnsen, A. Mah, D. Anastis, L. Fang, E. Halfnight, D. Lee, J. Lin, A. Lorch, S. McKay, H.M. Okada, J. Pan, A.K. Schultx, D. Tu, K. Wong, Z. Zhao, A. Alexeyenko, T. Buerglin, E. Sonnhammer, R. Schnabel, S.J. Jones, M.A. Marra, D.L. Baillie and D. G. Moerman. (2007) High Throughput In Vivo Analysis of Gene Expression in C. Elegans. In Press PLOS Biology.

Dupuy D, Bertin N, Hidalgo CA, Venkatesan K, Tu D, Lee D, Rosenberg J, Svrzikapa N, Blanc A, Carnec A, Carvunis AR, Pulak R, Shingles J, Reece-Hoyes J, Hunt-Newbury R, Viveiros R, Mohler WA, Tasan M, Roth FP, Le Peuch C, Hope IA, Johnsen R, Moerman DG, Barabasi AL, Baillie D, Vidal M. (2007) Genome-scale analysis of in vivo spatiotemporal promoter activity in Caenorhabditis elegans. Nat Biotechnol. In press. (Full text)

McGhee, J.D., Sleumer, M.C., Bilenky, M., Wong, K., McKay, S.J., Goszczynski, B., Tian, H., Krich, N.D., Khattra, J., Holt, R.A., Baillie, D.L., Kohara, Y., Marra, M.A., Jones, S.J.M., Moerman, D.G., Robertson, A.G. (2007) The ELT-2 GATA-factor and the global regulation of transcription in the C. elegans intestine. Developmental Biology 302:627-45

Chen, N., Mah, A., Blacque, O.E., Chu, J., Phgora, K., Bakhoum, M.W., Newbury, R.H., Khattra, J., Chan, S., Go, A., Efimenko, E., Johnsen, R., Phirke, P., Swoboda, P., Marra, M., Moerman, D.G., Stein, L.D. (2006) Identification of ciliary and ciliopathy genes in Caenorhabditis elegans through comparative genomics. Genome Biology 7:R126.

Carre-Pierrat, M., Baillie, D.L., Johnsen, R.C., Granger, L., Segalat, L. (2006) Characterization of the C. elegans G protein-coupled serotonin receptors. Invertebrate Neuroscience 6:189-205

Hao, L., Johnsen, R.C., Lauter, G. Baillie, D.L., Burglin, T.R. (2006) Comprehensive analysis of gene expression patterns of hedgehog-related genes. BMC Genomics 7:280.

Gallo, M., Mah, A.K., Johnsen, R.C., Rose, A.M., Baillie, D.L. (2006) Caenorhabditis elegans dpy-14: an essential collagen gene with unique expression profile and physiological roles in early development. Molecular Genetics and Genomics 275(6):527-39.

Zhao, Z., Fang, L., Chen, N., Johnsen, R.C., Stein, L., Baillie, D.L. (2005) Distinct regulatory elements mediate similar expression patterns in Caenorhabditis elegans' excretory cell. Journal of Biological Chemistry 280(46):38787-38794.

Tamas, I., Hodges, E., Dessi, P., Johnsen, R.C., Vaz Gomes, A. (2005) Experimental determination of gene function: a whole organism/cell lines approach. BMC Genomics 6(1):65 .

Zhao, Y., Johnsen, R.C., Baillie, D.L., Rose, A.M. (2005) Worms in Space? A model biological dosimeter. Gravitational and Space Biology Bulletin 18(2):11-16.

Maciejowski, J., Ahn, J.H., Cipriani, P.G., Killian, D.J., Chaudhary, A.L., Lee, J.I., Voutev, R., Johnsen, R.C., Baillie, D.L., Gunsalus, K.C., Fitch, D.H., Hubbard, E.J. (2005) Autosomal genes of autosomal/X-linked duplicated gene pairs and germline proliferation in C. elegans. Genetics 169:1997-2011.

Chen, N., Pai, S., Zhao, Z., Mah, A., Newbury, R., Johnsen, R.C., Moerman, D.G., Baillie, D.L., Stein, L.D. (2005) Identification of a novel nematode chemosensory gene family. PNAS 102(1):146-151.

Anyanful, A., Ono, K., Johnsen, R.C., Ly, H., Jensen, V., Baillie, D.L., Ono, S. (2004) The RNA-binding protein SUP-12 controls muscle-specific splicing of the ADF/cofilin pre-mRNA in Caenorhabditis elegans. Journal of Cell Biology 167(4):639-647

Zhao, Z., Fang, F.L., Johnsen, R.C., Baillie, D.L. (2004) ATP Binding Cassette Protein E (ABCE) is involved in gene transcription and translation in C. elegans. Biochemical and Biophysical Research Communications 323(1):104-111.

Blacque, O.E., Reardon, M.J., McCarthy, J., Li, C., Mahjoub, M.R., Ansley, S.J., Badano, J.L., Mah, A.K., Beales, P.L., Davidson, W.S., Johnsen, R.C., Audeh, M., Plasterk, R.H.A., Baillie, D.L., Katsanis, N., Quarmby, L.M., Wicks, S.R., Leroux, M.I.R. (2004) Loss of C. elegans BBS-7 and BBS-8 protein function results in cilia defects and compromised intraflagellar transport of PSM-5/polaris and CHE-11. Genes and Development. 18(13):1630-1642.

Ansley S.J., Badano, J.L., Blacque, O.E., Hill, J., Hoskins, B.E., Leitch, C.C., Kim, J.C., Ross, A.J., Eichers, E.R., Teslovich, T.M., Mah, A.K., Johnsen, R.C., Cavender, J.C., Lewis, R.A., Leroux, M.R., Beales, P.L., Katsanis, N. (2003) Basal body dysfunction is a likely cause of pleiotropic Bardet-Biedl syndrome. Nature 425: 628 - 633

Johnsen, R.C., Jones, S.C., Rose, A.M. (2000) Mutational accessibility of essential genes on chromosome I (left) in Caenorhabditis elegans. Molecular Genetics 263: 239-252.

Ren, P., Lim, C.S., Johnsen, R.C., Albert, P.S., Pilgrim, D., Riddle, D.L. (1996) Control of C. elegans Larval Development by Neuronal Expression of a TGF-á Homolog. Science 274: 1389-1391.

Barbazuk, W.B., Johnsen, R.C., Baillie, D.L. (1994) The generation and genetic analysis of suppressors of lethal mutations in the Caenorhabditis elegans rol-3(V) gene. Genetics 136: 129-143.

Johnsen, R.C., Baillie, D.L., (1991) Genetic analysis of a major segment [LGV(left)] of the genome of Caenorhabditis elegans. Genetics 129: 735-752.

Rosenbluth, R.E., Johnsen, R.C., Baillie, D.L., (1990) Pairing for recombination in LGV of Caenorhabditis elegans: a model based on recombination in deficiency heterozygotes. Genetics 124: 615-625.

Clark, D.V., Johnsen, R.C., McKim, K.S., Baillie, D.L., (1990) Analysis of lethal mutations induced in a mutator strain that activates transposable elements in Caenorhabditis elegans. Genome 33-1: 109-114.

Rosenbluth, R.E., Rogalski, T.M., Johnsen, R.C., Addison, L.M., Baillie, D.L., (1988) Genomic organization in Caenorhabditis elegans: Deficiency mapping on linkage group V(left). Genet. Res. 52: 105-118.

Johnsen, R.C., Baillie, D.L., (1988) Formaldehyde mutagenesis of the eT1 balanced region in Caenorhabditis elegans: Dose-response curve and the analysis of mutational events. Mut. Res. 201: 137-147.

BOOK CHAPTERS

Robert Johnsen, Martin Jones, Nathaniel Szewczyk, David Baillie (2008) C. elegans: a model system for studying biological effects of the space environment. Space Stations: Crew, Experiments and Missions. Hauppauge, NY.

Robert Johnsen and David Baillie. (2007) C. elegans as a Model System For Space Travel. An Anecdotal History of Nematology. Chapter 18, Section IX.

Bhagwati P. Gupta, Robert Johnsen, Nansheng Chen, (2007) Genomics and biology of the nematode Caenorhabditis briggsae (May 3, 2007), WormBook, ed. The C. elegans Research Community, WormBook, doi/10.1895/wormbook.1.136.1, http://www.wormbook.org.

McKay S.J., Johnsen, R.C., Khattra, J., Asano, J., Baillie, D.L., Chan, S., Dube, N., Fang, L., Goszczynski, B., Ha, E., Halfnight, E., Hollebakken, R., Huang, P., Hung, K., Jensen, V., Jones, S.J.M., Kai, H., Li, D., Mah, A., Marra, M., McGhee, J., Newbury, R., Pouzyrev, A., Riddle, D.L., Sonnhammer, E., Tian, H., Tu, D., Tyson, J.R., Vatcher, G., Warner, A., Wong, K., Zhao, Z., Moerman, D.G. (2003) Gene Expression Profiling of Cells, Tissues and Developmental Stages of the Nematode C. elegans. Cold Spring Harbor Symposium LXVIII: The Genome of Homo Sapiens, Cold Spring Harbor Press, Cold Spring Harbor, New York. Volume 68, pp. 159-170.

Johnsen, R.C., Baillie, D.L., (1997) Mutation, in C. elegans II Monograph 33, Cold Spring Harbor Laboratory Press, Cold Spring Harbor, New York, USA, Chapter 4, pp.79-95.

Johnsen, R.C., Clark, D.V., (1989) Mapping Genes in C. elegans. Tested Studies for Laboratory Teaching Ed. R.W. Peifer 109-118.

REVIEWS

David de Pomerai, Piyush Madhamshettiwar, Charumathi Anbalagan, Matthew Loose, Mainul Haque, John King, D. Kar Chowdhuri, Pradip Sinha, Bob Johnsen and David Baillie. (2009) The stress-response network in animals: proposals to develop a predictive mathematical model. Open Toxicology Journal. In press.