Simon Fraser University, Department of Molecular Biology and Biochemistry (MBB) 8888 University Drive, Burnaby, BC, V5A 1S6, Canada |
REFEREED JOURNAL PUBLICATIONS Ho Sui SJ, Lo R, Fernandes AR, Caulfield MD, Lerman JA, Xie L, Bourne PE, Baillie DL, Brinkman FS. (2012) Raloxifene attenuates Pseudomonas aeruginosa pyocyanin production and virulence. Int J Antimicrob Agents. 2012 Sep;40(3):246-51 Uyar B, Chu JS, Vergara IA, Chua SY, Jones MR, Wong T, Baillie DL, Chen N. (2012 ) RNA-seq analysis of the C. briggsae transcriptome. Genome Res. 2012 Aug;22(8):1567-80 Jones MR, Rose AM, Baillie DL. Oligoarray comparative genomic hybridization-mediated mapping of suppressor mutations generated in a deletion-biased mutagenesis screen. G3 (Bethesda). 2012 Jun;2(6):657-63. Epub 2012 Jun 1. Chu JS, Johnsen RC, Chua SY, Tu D, Dennison M, Marra M, Jones SJ, Baillie DL, Rose AM. Allelic ratios and the mutational landscape reveal biologically significant heterozygous SNVs. Genetics. 2012 Apr;190(4):1225-33. Jeffrey S.C. Chu, Robert C. Johnsen, Shu Yi Chua, Domena Tu, Mark Dennison, Marco Marra, Steven J.M. Jones, David L. Baillie and Ann M. Rose Analysis of the genome of a heterozygous lethal mutation in Caenorhabditis elegans Genetics. 2012 Apr;190(4):1225-33. Martin R. Jones ;Jim Chin Huang; Shu Yi Chua; David L. Baillie and Ann M. Rose The atm-1 gene is required for genome stability in Caenorhabditis elegans MGG 2012 Apr;287(4):325-35. Anbalagan C, Lafayette I, Antoniou-Kourounioti M, Haque M, King J, Johnsen B, Baillie D, Gutierrez C, Rodriguez Martin JA, de Pomerai D. (2012) Transgenic nematodes as biosensors for metal stress in soil pore water samples. Ecotoxicology: Volume 21, Issue 2 (2012), Page 439-455 2012 Mar;21(2):439-55 Boyer J-C, Carling J, Chua SY, Wilson D, Johnsen B, Baillie D, Branda NR (2012) Photomodulation of Fluorescent Upconverting Nanoparticle Markers in Live Organisms Using Molecular Switches. Chem. Eur. J. 2012 Mar 12;18(11):3122-6. doi: 10.1002/chem.201103767. Oczypok EA, Etheridge T, Freeman J, Stodieck L, Johnsen R, Baillie D, Szewczyk NJ. (2011) Remote automated multi-generational growth and observation of an animal in low Earth orbit. J R Soc Interface. . 2012 Mar 7;9(68):596-9 Chu, Jeffrey; Tarailo-Graovac, Maja; Zhang, Di; Wang, Jun-; Uyar, Bora; Tu, Domena; Trinh, Joanne; Baillie, David; Chen, Nansheng. (2012) Fine tuning of RFX/DAF-19-regulated target gene expression through binding to multiple sites in Caenorhabditis elegans. Nucleic Acids Res. 2012 Jan;40(1):53-64. Ono S, Nomura K, Hitosugi S, Tu DK, Lee JA, Baillie DL, Ono K. (2011) The two actin-interacting protein 1 genes have overlapping and essential function for embryonic development in Caenorhabditis elegans. Mol Biol Cell. 2011 Jul;22(13):2258-69. Shin H, Lee H, Fejes AP, Baillie DL, Koo HS, Jones SJ. (2011) Gene expression profiling of oxidative stress response of C. elegans aging defective AMPK mutants using massively parallel transcriptome sequencing. BMC Res Notes. 2011 Feb 8;4:34. Tarailo-Graovac M, Wang J, Tu D, Baillie DL, Rose AM, Chen N. (2010) Duplication of cyb-3 (cyclin B3) suppresses sterility in the absence of mdf-1/MAD1 spindle assembly checkpoint component in Caenorhabditis elegans. Cell Cycle. 2010 Dec 15;9(24):4858-65 Tarailo-Graovac M, Wang J, Chu JS, Tu D, Baillie DL, Chen N. (2010) Spindle assembly checkpoint genes reveal distinct as well as overlapping expression that implicates MDF-2/Mad2 in postembryonic seam cell proliferation in Caenorhabditis elegans. BMC Cell Biol. 2010 Sep 21;11:71. Cynthia R. Wagner, Lynnette Kuervers, David Baillie, Judith L. Yanowitz (2010) xnd-1 Regulates the Global Recombination Landscape in C. elegans. Nature. Oct 14;467(7317):839-43. Giordano-Santini R, Milstein S, Svrzikapa N, Tu D, Johnsen R, Baillie D, Vidal M, Dupuy D. (2010) An antibiotic selection marker for nematode transgenesis. Nat Methods. 2010 Sep;7(9):721-3. Chu JS, Baillie DL, Chen N. (2010) Convergent evolution of RFX transcription factors and ciliary genes predated the origin of metazoans. BMC Evol Biol. 2010 May 4;10(1):130. Ogura KI, Okada T, Mitani S, Gengyo-Ando K, Baillie DL, Kohara Y, Goshima Y. (2010) Protein phosphatase 2A cooperates with the autophagy-related kinase UNC-51 to regulate axon guidance in Caenorhabditis elegans. Development. 2010 May;137(10):1657-67.
Carrie L Simms, David L Baillie (2010) A strawberry notch homolog, let-765/nsh-1, positively regulates lin-3/egf
expression to promote RAS-dependent vulval induction in C. elegans. Dev Biol. 2010 May 15;341(2):472-85. Allan K Mah, Domena K Tu, Robert C Johnsen, Jeffrey S Chu, Nansheng Chen and David L Baillie (2010)
Characterization of the octamer, a cis-regulatory element that modulates excretory cell gene-expression in Caenorhabditis elegans,
BMC Molecular Biology. BMC Mol Biol. 2010 Mar 8;11:19.
Rose AM, O'Neil NJ, Bilenky M, Butterfield YS, Malhis N, Flibotte S, Jones MR, Marra M, Baillie DL, Jones SJ.
(2010) Genomic sequence of a mutant strain of Caenorhabditis elegans with an altered recombination pattern. BMC Genomics. 2010 Feb 23;11:131.
Sleumer MC, Mah AK, Baillie DL, Jones SJ. (2010) Conserved elements associated with ribosomal genes
and their trans-splice acceptor sites in Caenorhabditis elegans. Nucleic Acids Res. 2010 May;38(9):2990-3004. Epub 2010 Jan 25. Park JO, Pan J, Möhrlen F, Schupp MO, Johnsen R, Baillie DL, Zapf R, Moerman DG, Hutter H. (2010)
Characterization of the astacin family of metalloproteases in C. elegans. BMC Dev Biol. 2010 Jan 28;10:14. Mah AK, Chew DS, Baillie DL.(2009) Characterizing the function and transcriptional regulation of let-721,
A Caenorhabditis elegans homolog of human electron transfering flavoprotein dehydrogenase. MGG. Mol Genet Genomics. 2009
Dec;282(6):555-70. Al-Atar U, Fernandes R, Johnsen B, Baillie D, Branda NR. (2009) A photocontrolled molecular switch regulates paralysis in a living
organism. J Am Chem Soc. 2009 Nov 11;131(44):15966-7. Giacomotto J, Pertl C, Borrel C, Walter MC, Bulst S, Johnsen B, Baillie DL, Lochmüller H, Thirion C, Ségalat
L. (2009) Evaluation of the therapeutic potential of carbonic anhydrase inhibitors in two animal models of dystrophin deficient
muscular dystrophy. Hum Mol Genet. 2009 Nov 1;18(21):4089-101. Vergara IA, Mah AK, Huang JC, Tarailo-Graovac M, Johnsen RC, Baillie DL, Chen N. (2009) Polymorphic segmental
duplications in the nematode Caenorhabditis elegans. BMC Genomics. 2009 Jul 21;10:329. Meissner B, Warner A, Wong K, Dube N, Lorch A, McKay SJ, Khattra J, Rogalski T, Somasiri A, Chaudhry I, Fox RM,
Miller DM 3rd, Baillie DL, Holt RA, Jones SJ, Marra MA, Moerman DG. (2009) An integrated strategy to study muscle development and
myofilament structure in Caenorhabditis elegans. PLoS Genet. 2009 Jun;5(6):e1000537 Jones MR, Chua SY, O'Neil NJ, Johnsen RC, Rose AM, Baillie DL. (2009) High resolution molecular analysis of
deficiencies affecting recombination in C. elegans. Mol Genet Genomics.2009 Jul;282(1):37-46. Schmidt KL, Marcus-Gueret N, Adeleye A, Webber J, Baillie D, Stringham EG. (2009) The cell migration
molecule UNC-53/NAV2 is linked to the ARP2/3 complex by ABI-1. Development. 2009 Feb;136(4):563-74. Yamashiro S, Cox EA, Baillie DL, Hardin JD, Ono S(2008) Sarcomeric actin organization
is synergistically promoted by tropomodulin, ADF/cofilin, AIP1, and profilin in C. elegans. Journal of Cell
Science, Dec 1;121.
(Full text) Shin H, Hirst M, Bainbridge MN, Magrini V, Mardis E, Moerman DG, Marra MA, Baillie DL,
Jones SJ. (2008) Transcriptome analysis for Caenorhabditis elegans based on novel expressed sequence tags.
BMC Biol. 2008 Jul 8;6:30.
(Full text) Caruso ME, Jenna S, Bouchecareilh M, Baillie DL, Boismenu D, Halawani D, Latterich M,
Chevet E. (2008) GTPase-mediated regulation of the unfolded protein response in Caenorhabditis elegans is
dependent on the AAA+ ATPase CDC-48. Mol Cell Biol. Jul; 28(13):4261-74.
(Full text) Jones MR, Maydan JS, Flibotte S, Moerman DG, Baillie DL. (2007) Oligonucleotide Array
Comparative Genomic Hybridization (oaCGH) based characterization of genetic deficiencies as an aid to gene
mapping in Caenorhabditis elegans. BMC Genomics. Nov 7;8(1):402.
(Full text) Desnoyers S, Blanchard PG, St-Laurent JF, Gagnon SN, Baillie DL, Luu-The V. (2007)
Caenorhabditis elegans LET-767 is able to metabolize androgens and estrogens and likely shares common ancestor
with human types 3 and 12 17beta-hydroxysteroid dehydrogenases.
J Endocrinol. Nov;195(2):271-9.
(Full text) Kurz CL, Shapira M, Chen K, Baillie DL, Tan MW. (2007) Caenorhabditis elegans pgp-5 is
involved in resistance to bacterial infection and heavy metal and its regulation requires TIR-1 and a p38 map
kinase cascade. Biochem Biophys Res Commun. Nov 16;363(2):438-43.
(Full text) Mah AK, Armstrong KR, Chew DS, Chu JS, Tu DK, Johnsen RC, Chen NS, Chamberlin HM, Baillie DL
( 2007) Transcriptional Regulation Of AQP-8, A Caenorhabditis elegans Aquaporin Exclusively
Expressed In The Excretory System, By The POU Homeobox Transcription Factor CEH-6.
J Biol Chem. 282(38):28074-86.
(Full text) Yang Zhao, Martin Jones, David Baillie, and Ann Rose (2007) Developing an Integrating Biological
Dosimeter for Spaceflight. Microgravity Science and Technology.(Full text) Peiming Huang, Erin D. Pleasance, Jason S. Maydan, Rebecca Hunt-Newbury, Nigel J. O'Neil,
Allan Mah, David L. Baillie, Marco A. Marra, Donald G. Moerman and Steven J. M. Jones (2007)
Identification and Analysis of Internal Promoters in Caenorhabditis elegans Operons.
Genome Research.
(Full text) R. Hunt-Newbury, R. Viveriros, R. Johnsen, A. Mah, D. Anastis, L. Fang, E. Halfnight, D. Lee,
J. Lin, A. Lorch, S. McKay, H.M. Okada, J. Pan, A.K. Schultx, D. Tu, K. Wong, Z. Zhao, A.
Alexeyenko, T. Buerglin, E. Sonnhammer, R. Schnabel, S.J. Jones, M.A. Marra, D.L. Baillie and
D. G. Moerman. (2007) High Throughput In Vivo Analysis of Gene Expression in C. Elegans.
PLOS Biology. Sep;5(9):e237.(Full text) Dupuy D, Bertin N, Hidalgo CA, Venkatesan K, Tu D, Lee D, Rosenberg J,
Svrzikapa N, Blanc A, Carnec A, Carvunis AR, Pulak R, Shingles J, Reece-Hoyes J, Hunt-Newbury R,
Viveiros R, Mohler WA, Tasan M, Roth FP, Le Peuch C, Hope IA, Johnsen R, Moerman DG, Barabasi AL,
Baillie D, Vidal M. (2007) Genome-scale analysis of in vivo spatiotemporal promoter activity in
Caenorhabditis elegans. Nat Biotechnol. 25(6):663-668.
(Full text) Zhongying Zhao, James H. Thomas, Nansheng Chen, Jonathan A. Sheps and David
L. Baillie (2007) Comparative Genomics and Adaptive Selection of the ATP-Binding
Cassette Gene Family in Caenorhabditis Species. Genetics 175:1407-18.
(Full text) McGhee, J.D., Sleumer, M.C., Bilenky, M., Wong, K., McKay, S.J., Goszczynski,
B., Tian, H., Krich, N.D., Khattra, J., Holt, R.A., Baillie, D.L., Kohara, Y.,
Marra, M.A., Jones, S.J.M., Moerman, D.G., Robertson, A.G. (2007) The ELT-2 GATA-factor
and the global regulation of transcription in the C. elegans intestine.
Developmental Biology 302:627-45.
(Full Text) Chen, N., Mah, A., Blacque, O.E., Chu, J., Phgora, K., Bakhoum, M.W.,
Newbury, R.H., Khattra, J., Chan, S., Go, A., Efimenko, E., Johnsen, R., Phirke,
P., Swoboda, P., Marra, M., Moerman, D.G., Stein, L.D. (2006) Identification of
ciliary and ciliopathy genes in Caenorhabditis elegans through comparative
genomics. Genome Biology
7:R126.
(Full
Text) Carre-Pierrat, M., Baillie, D.L., Johnsen, R.C., Granger, L., Segalat, L.
(2006) Characterization of the C. elegans G protein-coupled serotonin receptors.
Invertebrate Neuroscience 6:189-205.
(Full Text) Hao, L., Johnsen, R.C., Lauter, G. Baillie, D.L., Burglin, T.R. (2006)
Comprehensive analysis of gene expression patterns of hedgehog-related genes.
BMC Genomics 7:280.
(Full Text) Blacque, O.E., Li, C., Inglis, P.N., Esmail, M.A., Ou, G., Mah, A.K.,
Baillie, D.L., Scholey, J.M., Leroux, M.R. (2006) The WD repeat-containing
protein, IFTA-1, is required for retrograde intraflagellar transport. Molecular
Biology of the Cell 12:5053-5062.
(Full Text)
Hao, L., Mukherjee, K., Liegeois, S., Baillie, D.L., Labouesse, M., Burglin,
T.R. (2006) The hedgehog-related gene qua-1 is required for molting in
Caenorhabditis elegans. Developmental Dynamics 235:1469-1481.
(Full Text) Gallo, M., Mah, A.K., Johnsen, R.C., Rose, A.M., Baillie, D.L. (2006)
Caenorhabditis elegans dpy-14: an essential collagen gene with unique expression
profile and physiological roles in early development. Molecular Genetics and
Genomics 275(6):527-39.
(Full Text) Polet, D., Lambrechts, A., Ono, K., Mah, A., Peelman, F., Vandekerckhove, J.,
Baillie, D.L., Ampe, C., Ono, S. (2006) C. elegans expresses three functional
profilins in a tissue specific manner. Cell Motil. Cytoskeleton. 63(1):14-28.
(Full Text) Zhao, Z., Fang, L., Chen, N., Johnsen, R.C., Stein, L., Baillie, D.L. (2005)
Distinct regulatory elements mediate similar expression patterns in
Caenorhabditis elegans' excretory cell. Journal of Biological Chemistry 280(46):38787-38794.
(Full Text) Chen, N., Pai, S., Zhao, Z., Mah, A., Newbury, R., Johnsen, R.C., Moerman,
D.G., Baillie, D.L., Stein, L.D. (2005) Identification of a nematode
chemosensory gene family. PNAS 102(1):146-151.
(Full Text) Blacque, O.E., Perens, E.A., Boroevich, K.A., Inglis, P.N., Li, C., Warner,
A., Khattra, J., Holt, R.A., Ou, G., Mah, A.K., McKay, A.K., Huang, P., Swoboda,
P., Jones, S.J.M., Mara, M.A., Moerman, D.G., Baillie, D.L., Shaham, S., Leroux,
M.R. (2005) Functional genomics of the cilium, a sensory organelle. Current
Biology 15(10):935-941.
(Full Text) Zhao, Y., Johnsen, R.C., Baillie, D.L., Rose, A.M. (2005) Worms in Space? A
model biological dosimeter. Gravitational and Space Biology Bulletin 18(2):11-16.
(Full Text) Hsiang, T., Baillie, D.L. (2005) Comparison of the yeast proteome to other
fungal genomes to find core fungal genes. Journal of Molecular Evolution 60(4):475-483.
(Full Text) Maciejowski, J., Ahn, J.H., Cipriani, P.G., Killian, D.J., Chaudhary, A.L.,
Lee, J.I., Voutev, R., Johnsen, R.C., Baillie, D.L., Gunsalus, K.C., Fitch, D.H.,
Hubbard, E.J. (2005) Autosomal genes of autosomal/X-linked duplicated gene pairs
and germline proliferation in C. elegans. Genetics 169:1997-2011.
(Full Text) Zhao, Z., Sheps, J.A., Ling, V., Fang, L.L., Baillie, D.L. (2004) Expression
analysis of ABC Transporters reveals differential functions of tandemly
duplicated genes in Caenorhabditis elegans. Journal of Molecular Biology 344(2):409-417.
(Full Text) Anyanful, A., Ono, K., Johnsen, R.C., Ly, H., Jensen, V., Baillie, D.L., Ono,
S. (2004) The RNA-binding protein SUP-12 controls muscle-specific splicing of
the ADF/cofilin pre-mRNA in Caenorhabditis elegans. Journal of Cell Biology 167(4):639-647.
(Full Text) Zhao, Z., Fang, F.L., Johnsen, R.C., Baillie, D.L. (2004) ATP Binding
Cassette Protein E (ABCE) is involved in gene transcription and translation in
C. elegans. Biochemical and Biophysical Research Communications 323(1):104-111.
(Full Text) Fan, Y., Esmail, M.A., Ansley, S.J., Blacque, O.E., Boroevich, K., Ross, A.J.,
Moore, S.J., Badano, J.L., May-Simera, H., Compton, D.S., Green, J.S., Lewis,
R.A., van Haelst, M.M., Parfrey, P.S., Baillie, D.L., Beales, P.L., Katsanis,
N., Davidson, W.S., Leroux, M.R. (2004) Mutations in a member of the ras
superfamily of small GTP-binding proteins causes Bardet-Biedl syndrome. Nature
Genetics 36(9):989-993.
(Full Text) Henricson, A., Sonnhammer, E.L.L., Baillie, D.L., Vaz Gomes, A. (2004)
Functional characterization in Caenorhabditis elegans of transmembrane
worm-human orthologs. BMC Genomics 5(1):85.
(Full
Text) Blacque, O.E., Reardon, M.J., McCarthy, J., Li, C., Mahjoub,
M.R., Ansley, S.J., Badano, J.L., Mah, A.K., Beales, P.L., Davidson, W.S.,
Johnsen, R.C., Audeh, M., Plasterk, R.H.A., Baillie, D.L., Katsanis, N., Quarmby,
L.M., Wicks, S.R., Leroux, M.I.R. (2004) Loss of C. elegans BBS-7 and BBS-8
protein function results in cilia defects and compromised intraflagellar
transport of PSM-5/polaris and CHE-11. Genes and Development. 18(13):1630-1642.
(Full Text) Kao, G., Tuck, S., Baillie, D.L., Sundaram, M.V. (2004) C. elegans SUR-6/PR55
cooperates with LET-92/protein phosphatase 2A and promotes Raf activity
independently of inhibitory Akt phosphorylation sites. Development. 131(4):755-65.
(Full Text) Hsiang, T., Baillie, D.L. (2004) Recent progress, developments and issues in
comparative fungal genomics. Can. J. Plant Pathol. 26:19-30.
(Full Text) Sheps, J.A., Ralph, S., Zhao, Z., Baillie, D.L., Ling, V. (2004) The ABC
transporter gene family of Caenorhabditis elegans has implications for the
evolutionary dynamics of multidrug resistance in eukaryotes. Genome Biology. 5:R15.
(Full Text) Wei, H.C., Sanny, J., Shu, H., Baillie, D.L., Brill, J.A., Price, J.V.,
Harden, N. (2003) The Sac1 lipid phosphatase regulates cell shape change and the
JNK cascade during dorsal closure in Drosophila. Curr Biol. Oct 28;13(21):1882-7.
(Full Text) Kuervers, L.M., Jones, C.L., O'Neil, N.J., Baillie, D.L. (2003) The sterol
modifying enzyme LET-767 is essential for growth, reproduction and development
in Caenorhabditis elegans. Mol Genet Genomics. Oct;270(2):121-31. Epub 2003 Aug 05.
(Full Text) Severson, A.F., Baillie, D.L., Bowerman, B. (2002) A Formin Homology Protein
and a Profilin Are Required for Cytokinesis and Arp2/3-Independ ent Assembly of
Cortical Microfilaments in C. elegans. Curr Biol. Dec 23;12(24):2066-75.
(Full Text) Furuta, T., Baillie, D.L., Schumacher, J.M. (2002)
Caenorhabditis elegans Aurora A kinase AIR-1 is required for postembryonic cell
divisions and germline development. Genesis Dec;34(4):244-50.
(Full Text) Baillie, D.L. (2002) Genomes in motion. Genome Res . Jun;12(6):843.
(Full Text) Grishok, A., Pasquinelli, A.E., Conte, D., Li, N., Parrish,
S., Ha, I., Baillie, D.L., Fire, A., Ruvkun, G., Mello (2001) Genes and
Mechanisms Related to RNA Interference Regulate Expression of the Small Temporal
RNAs that Control C. elegans Developmental Timing. Cell. Jul 13;106(1):23-34.
(Full Text) Jones, S.J.M., Riddle, D., Pouzyrev, A.T., Velculescu, V., Hillier, L., Eddy,
S.R., Baillie, D.L., Waterston, R., Marra, M.A. (2001) Changes in gene
expression associated with developmental arrest and longevity in C. elegans.
Genome Research. Aug;11(8):1346-52.
(Full Text) Hong, L., Elbl, T., Ward, J., Franzinz-Armstrong, C., Rybicka, K.K., Gatewood,
B., Baillie, D.L., Bucher, E.A. (2001) Mup-4 is a transmembrane protein with functions
in epithelial cell adhesion at hemidesmosomes and transmission of muscle forces
in Caenorhabditis elegans. J Cell Biol. Jul 23;154(2):403-414
(Full Text) McRory, J.E., Santi, C.M., Hamming, K.S., Mezeyova, J., Sutton, K.G., Baillie
D.L., Stea, A., Snutch, T.P. (2001) Molecular and functional characterization of
a family of rat brain T-type calcium channels. J. Biol. Chem. Feb 9;276(6):3999-4011.(Full
Text) Legouis, R., Gansmuller, A., Sookhareea, S., Bosher, J., Baillie, D.L., Labouesse, M. (2000)
LET-413 is a basolateral protein required for assembly of adherens junctions in
C. elegans. Nature Cell Biology 2(7):415-422.
(Full
Text) Baillie, D.L., Rose, A.M. (2000) WABA a success: A New Tool For Comparative
Genomics. Genome Research 10(8):1070-1072. (Solicited review)
(Full Text) Roubin R, Naert K, Popovici C, Vatcher G, Coulier F, Thierry-Mieg J,
Pontarotti P, Birnbaum D, Baillie D, Thierry-Mieg D. (1999) let-756, a C.
elegans fgf essential for worm development. Oncogene (48):6741-6747.
(Full Text) Ono, S., Baillie, D.L., Benian, G.M. (1999) UNC-60B, an ADF/Cofilin Family
Protein, Is Required for Proper Assembly of Actin into Myofibrils in
Caenorhabditis elegans Body Wall Muscle. J. Cell Biol. (145) 3: 491-502.
(Full Text) Thacker, C., Marra, M.A., Jones, A., Baillie, D.L., Rose, A.M. (1999)
Functional Genomics in C. elegans: An approach involving the comparisons of
Sequences from Related Nematodes. Genome Research (9) 348-359.
(Full Text) Vatcher, G., Marra, M.A., Baillie, D.L. (1999) Identification and
characterization of a serine hydroxymethyltransferase isoform in Caenorhabditis
briggsae. Gene. Apr 230(2): 137-144.(Full
Text) Stewart, H.I., O'Neil, N.J., Janke, D.J., Franz, N.W., Chamberlin, H.,
Howell, A.M. Gilchrist, E.J., Ha, T., Kuervers, L.M., Vatcher, G., Baillie, D.L.
(1998) Lethal mutations defining 112 complementation groups in a 4.5 megabase
sequenced region of Caenorhabditis elegans chromosome III. Mol. Gen. Genetics, 260(3/2): 280-288.
(Full Text)
Vatcher, G.P., Thacker, C.M., Kaletta, T., Schnabel, H., Schnabel, R.,
Baillie, D.L. (1998) Serine Hydroxymethyltransferase is Maternally Essential in
Caenorhabditis elegans. J.B.C., 273(11): 6066-6073.
(Full
Text) Janke, D.L., Jacqueline E. Schein, J.E., Ha, T., Franz, N.W., O'Neil, N.J.,
Vatcher, G.P., Stewart, H.I., Kuervers, L.M., Baillie, D.L., Rose, A.M. (1997)
Interpreting a sequenced genome: toward a cosmic transgenic library of
Caenorhabditis elegans. Genome Research 7(10): 974-985.
(Full Text) Chamberlin, H.M., Palmer, R.P., Newman, A.P., Sternberg, P.W., Baillie,
D.L.,Thomas, J.H. (1997) The PAX Gene egl-38 Mediates Developmental Patterning
in Caenorhabditis elegans. Development, 124: 3919-3928.
(Full Text) Zhen, M., Schein, J.E., Baillie, D.L., Candido, P.M. (1996) An essential
ubiquitin-conjugating enzyme with tissue and developmental specificity in the
nematode Caenorhabditis elegans. EMBO, 15(13): 3229-3237.
(Full
Text) Jones, S., Baillie, D.L. (1995) Characterization of the let-653 gene in
Caenorhabditis elegans. Mol. Gen. Genet. 248(6): 719-726.
(Full Text) Clark, D.V., Suleman, D.S., Beckenbach, K.A., Gilchrist, E.J., Baillie, D.L.
(1995) Molecular cloning and characterization of the dpy-20 gene of
Caenorhabditis elegans. Mol. Gen. Genet. 247: 367-378.
(Full Text) Marra, M.A., Baillie, D.L. (1994) Recovery of duplications by drug
resistance selection in Caenorhabditis elegans. Genome 37(4): 701-705.
(Full Text) McKim, K.S., Matheson, C., Marra, M.A., Wakarchuk, M.F., Baillie, D.L. (1994)
The C. elegans unc-60 gene encodes proteins homologous to a family of actin
binding proteins. Mol. Gen. Genet. 242: 346-357.
(Full Text) Barbazuk, W.B., Johnsen, R.C., Baillie, D.L. (1994) The generation and
genetic analysis of suppressors of lethal mutations in the Caenorhabditis
elegans rol-3(V) gene. Genetics 136: 129-143.
(Full Text) Schein, J.E., Marra, M.A., Benian, G.M., Fields, C., Baillie, D.L. (1993) The
use of deficiencies to determine essential gene content in the let-56 - unc-22
region of Caenorhabditis elegans. Genome 36: 1148-1156.
(Full Text) Amaar, Y.G., Baillie, D.L. (1993) Cloning and characterization of the C.
elegans histidyl-tRNA synthetase gene. Nucleic Acid Research 21: 4344-4347.
(Full Text)
(2) Lévesque, C.A., Beckenbach, K., Baillie, D.L., Rahe, J.E. (1993)
Pathogenicity and DNA restriction fragment length polymorphisms of isolates of
Pythium spp. from glyphosate-treated seedlings. Mycological Research 97:
307-312. Marra, M.A., Prasad, S.S., Baillie, D.L. (1993) Molecular analysis of two
genes between let-653 and let-56 in the unc-22(IV) region of Caenorhabditis
elegans. Mol. Gen. Genet. 236: 289-298.
(Full Text) Xue, B., Baillie, D.L, Beckenbach, K., Webster, J.M. (1992) DNA hybridization
probes for studying the affinities of three Meloidogyne populations. Fundam.
appl. Nematol. 15: 35-41. Clark, D.V., Baillie, D.L. (1992) Genetic analysis and complementation by
germ-line transformation of lethal mutations in the unc-22 IV region of
Caenorhabditis elegans. Mol. Gen. Genet. 232: 97-105.
(Full Text) Johnsen, R.C., Baillie, D.L. (1991) Genetic Analysis of a Major Segment [LGV(left)]
of the Genome of Caenorhabditis elegans. Genetics 129: 735-752.
(Full Text) Stewart, H.I., Rosenbluth, R.E., Baillie, D.L. (1991) Most ultraviolet
irradiation induced mutations in the nematode Caenorhabditis elegans are
chromosomal rearrangements. Mutation Research 249: 37-47.
(Full Text) Prasad, S.S., Harris, L.J., Baillie, D.L., Rose, A.M. (1991) Evolutionarily
conserved regions in Caenorhabditis transposable elements deduced by sequence
comparison. Genome 34: 6-12.
(Full Text) Charest, D.L., Clark, D.V., Green, M.E., Baillie, D.L. (1990) Genetic and
fine structure analysis of unc-26(IV) and adjacent regions in Caenorhabditis
elegans. Mol. Gen. Genet. 221: 459-465.
(Full Text) Heschl, M.F.P., Baillie, D.L. (1990) Functional elements and domains inferred
from sequence comparisons of a heat shock gene in two nematode species. J. Mol.
Evol. 31: 3-9.
(Full Text) Rosenbluth, R.E., Johnsen, R.C., Baillie, D.L. (1990) Pairing for
recombination in LGV of Caenorhabditis elegans: A model based on recombination
in deficiency heterozygotes. Genetics 124: 615-625.
(Full Text) Clark, D.V., McKim, K.S., Johnsen, R.C., Baillie, D.L. (1990) Analysis of
lethal mutations induced in a mutator strain that activates transposable
elements in Caenorhabditis elegans. Genome 33: 109-114.
(Full Text) Webster, J.M., Anderson, R.V., Baillie, D.L., Beckenbach, K., Curran, J.,
Rutherford, T.A. (1990) DNA probes for differentiating isolates of the pinewood
nematode species complex. Revue de Nématologie 3 (3): 255-263. Bhattacharya, D., Baillie, D.L., Druehl, L.D. (1990) Population analysis of
the kelp Costaria costata (Phaeophyta) using a polymorphic ribosomal DNA probe.
Pl. Syst. Evol. 170: 177-191. Prasad, S.S., Baillie, D.L. (1989) Evolutionary conserved coding sequences in
the dpy-20 - unc-22 region of Caenorhabditis elegans. Genomics 5: 185-198.
(Full Text) Heschl, M.F.P., Baillie, D.L. (1989) Characterization of the hsp70 multigene
family in Caenorhabditis elegans. DNA 8: 233-243.
(Full
Text) Heschl, M.F.P., Baillie, D.L. (1989) Identification of a heat shock
pseudogene in Caenorhabditis elegans. Genome 32: 190-195.
(Full Text) Fain, R.S., Baillie, D.L., Druehl, L.D. (1988) Repeat and single copy
sequences are differentially conserved in the evolution of kelp chloroplast. J.
Phycol. 24: 292-302. Harris, L.J., Baillie, D.L., Rose, A.M. (1988) Sequence identity between an
inverted repeat family of transposable elements in Drosophila and Caenorhabditis.
Nucleic Acid Research 16: 5991-5998.
(Full Text) Clark, D.V., Rogalski, T.M., Donati, L.M., Baillie, D.L. (1988) The unc-22
region of Caenorhabditis elegans: genetic analysis of lethal mutations. Genetics
119: 345-353.
(Full
Text) Johnsen, R.C., Baillie, D.L. (1988) Formaldehyde mutagenesis in
Caenorhabditis elegans: Dose-response curve and the analysis of mutational
events. Mutation Research 201: 137-147.
(Full
Text) Snutch, T.P., Heschl, M.F.P., Baillie, D.L. (1988) The Caenorhabditis elegans
hsp70 gene family: A molecular genetic characterization. Gene 64: 241-255.
(Full Text) Rosenbluth, R.E., Rogalski, T.M., Johnsen, R.C., Addison, L.M., Baillie, D.L.
(1988) Genomic organization in Caenorhabditis elegans: Deficiency mapping on
linkage group V (left). Genetical Research 52: 105-118.
(Full Text) McKim, K.S., Heschl, M.F.P., Rosenbluth, R.E., Baillie, D.L. (1988) Genetic
organization of the unc-60 region in Caenorhabditis elegans. Genetics 118:
49-59. (Full
Text) Baillie, D.L., Beckenbach, K.A., Rose, A.M. (1985) Cloning within the unc-43
unc-31 (IV) interval of the Caenorhabditis elegans genome using Tc1 linkage
selection. Can. J. Genet. Cytol. 27: 457-466.
(Full Text) Rogalski, T.M., Baillie, D.L. (1985) Genetic organization of the unc-22 IV
gene and the adjacent region in Caenorhabditis elegans. Mol. Gen. Genet. 201:
409-414.
(Full Text) Rosenbluth, R.E., Cuddeford, C., Baillie, D.L. (1985) Mutagenesis in
Caenorhabditis elegans. II. A spectrum of mutational events induced with 1500 R
gamma radiation. Genetics 109: 493-511.
(Full Text) Curran, J., Baillie, D.L., Webster, J.M. (1985) Use of genomic DNA
restriction fragment length differences to identify nematode species.
Parasitology 90: 137-144. Snutch, T.P., Baillie, D.L. (1984) A high degree of DNA strain polymorphism
associated with the major heat shock gene in Caenorhabditis elegans. Mol. Gen.
Genet. 195: 329-335.
(Full Text) Rose, A.M., Baillie, D.L., Curran, J. (1984) Meiotic pairing behavior of two
free duplications of linkage group I in Caenorhabditis elegans. Mol. Gen. Genet.
195: 52-56. (Full
Text) Rosenbluth, R.E., Cuddeford, C., Baillie, D.L. (1983) Mutagenesis in
Caenorhabditis elegans: I. A Rapid eukaryotic mutagen test system using the
reciprocal translocation, eT1(III;V). Mutation Research 110: 39-48.
(Full Text) Snutch, T.P., Baillie, D.L. (1983) Alterations in the pattern of gene
expression following heat shock in the nematode Caenorhabditis elegans. Can. J.
Biochem. Cell Biol. 61: 480-487.
(Full
Text) Rogalski, T.M., Moerman, D.G., Baillie, D.L. (1982) Essential Genes and
Deficiencies in the unc-22 IV Region of Caenorhabditis elegans. Genetics 102:
725-736. (Full
Text) Rose, A.M., Baillie, D.L., Candido, E.P.M., Beckenbach, K.A., Nelson, D.
(1982) The linkage mapping of cloned restriction fragment length differences in
Caenorhabditis elegans. Mol. Gen. Genet. 188: 286-291.
(Full Text) Moerman, D.G., Plurad, S., Waterston, R.H., Baillie, D.L. (1982) Mutations in
the unc-54 myosin heavy chain gene of C. elegans that alter contractility but
not muscle structure. Cell 29: 773-781.
(Full
Text) Rosenbluth, R.E., Baillie, D.L. (1981) The genetic analysis of a recipocal
translocation, eTl (III;V), in C. elegans. Genetics 99: 415-428.
(Full Text) Moerman, D.G., Baillie, D.L. (1981) Formaldehyde mutagenesis in the nematode C. elegans.
Mutation Research 80: 273-279.
(Full Text) Rose, A.M., Baillie, D.L. (1980) Genetic organization of the region around
unc-l5(I), a gene affecting paramyosin in C. elegans. Genetics 96: 639-648.
(Full Text)
Rose, A.M., Baillie, D.L. (1979b) A mutation in Caenorhabditis elegans that
increases recombination frequency more than threefold. Nature 281: 599-600.
(Full Text) Rose, A.M., Baillie, D.L. (1979a) The effect of temperature and parental age
on recombination frequency and nondisjunction in Caenorhabditis elegans.
Genetics 92: 409-418.
(Full
Text) Moerman, D.G., Baillie, D.L. (1979) Genetic organization in Caenorhabditis
elegans: Fine structure analysis of the unc-22 gene. Genetics 91: 95-103.
(Full Text) Poland, B.J., Baillie, D.L. (1978) Cell ploidy in molar placental disease.
Teratology. Riekki, K., Baillie, J.E., Nair, K.K., Dill, F.J., Poland, B.J., Baillie, D.L.
(1977) Rapid determination of polyploidy in human chorionic tissue section.
Human Genetics 37: 299-304.
(Full Text)
Candido, E.P.M., Honda, B.M., Baillie, D.L. (1976) Low levels of non-histone
chromosomal proteins in trout testis chromatin. F.E.B.S. Letters 6l: 260-262.
(Full Text) Chovnick, A., Gelbart, M., McCarron, M., Osmond, B., Candido, E.P.M.,
Baillie, D.L. (1976) Organization of the rosy locus in D. melanogaster: Evidence
for a control element adjacent to the xanthine dehydrogenase structural element.
Genetics 84: 233-255. Honda, B.M., Baillie, D.L., Candido, E.P.M. (1975) Properties of chromatin
subunits in developing trout testis. J. Biol. Chem. 250 (12): 4643-4647.
(Full Text) Honda, B., Baillie, D.L., Candido, E.P.M. (1974) The subunit structure of
chromatin: Characteristics of nucleohistone and nucleoprotamine from developing
trout testis. F.E.B.S. Letters 48(1): 156-159.
(Full Text)
Griffin, B.E., Baillie, D.L. (1973) Precursors of stable RNA accumulated in
mutant of E. coli. F.E.B.S. Letters 34: 273-279.
(Full Text) Travers, A.A., Baillie, D.L., Pedersen, S. (1973) The effect of DNA
conformation on ribosomal RNA synthesis in vitro. Nature New Biol. 243: 161-163.
Baillie, D.L. (1971) A study of tryptophan pyrrolase mutant suppression in
Drosophila melanogaster. Molec. Gen. Genetics 112: 341-353. Chovnick, A., Ballantyne, G.H., Baillie, D.L., Holm, D.G. (1970) Gene
conversion in higher organisms. I. Half-tetrad analysis of recombination within
the rosy cistron of Drosophila melanogaster. Genetics 66: 315-329. Finnerty, V., Baillie, D.L., Chovnick, A. (1969) A chemical system for mass
collection of virgin females and males. D.I.S. 45: 190. Baillie, D.L., Suzuki, D.T., Tarasoff, M. (1968) Temperature-sensitive
mutations in Drosophila melanogaster. II. Frequency among second chromosome
recessive lethals induced by ethyl methane sulfonate. Can. J. Genet. Cytol. 10:
412-421. Suzuki, D.T., Piternick, L.K., Hayashi, S., Tarasoff, M., Baillie, D.L.,
Erasmus. U. (1967) Temperature-sensitive mutations in Drosophila melanogaster.
I. Relative frequencies among x-ray, and chemically induced sex-linked recessive
lethals and semi-lethals. Proc. Nat. Acad. Sci. 57: 907-912.
(Full Text) Singer, K., Chovnick, A., Suzuki, D.T., Baillie, D.L., Hoar, D. (1967)
Attempts to induce crossing-over in Drosophila melanogaster males with ovarian
extracts. Nature 214 (5087): 503-504.
(Full Text)
Suzuki, D.T., Baillie, D.L., Parry, D. (1966) The origin of multiple
crossover chromatids in short genetic intervals in Drosophila melanogaster.
Genetics 54: 1359-1371.
(Full Text) BOOK CHAPTERS Robert Johnsen, Martin Jones, Nathaniel Szewczyk,
David Baillie (2008) C. elegans: a model system for studying biological effects of the space
environment. Space Stations: Crew, Experiments and Missions. Hauppauge, NY. Robert Johnsen and David Baillie. (2007) C.
elegans as a Model System For Space Travel. An Anecdotal History of Nematology. Chapter 18,
Section IX. Hsiang, T. and D.L. Baillie. 2006. Issues in comparative
fungal genomics. Chapter 4 in: D.K. Arora, R. Berka and G.B. Singh (eds). Applied
Mycology and Biotechnology, Bioinformatics, Volume 6:100-122. Elsevier Science,
Amsterdam. 350 pp. M.L. Edgley, D.L. Baillie, D.L. Riddle, and A.M. Rose
(2006) Genetic balancers (April 6, 2006) Wormbook, ed. The C. elegans Research
Community, WormBook, doi/10.1895/wormbook.1.89.1, http://www.wormbook.org.
(Full text) R.C. Johnsen, D.L. Baillie and A. M. Rose (2004) A
Biological Dosimeter for Assaying Genetic Damage due to Radiation Exposure in
Space. International Astronautical Congress, Vancouver, Canada, October 2004. McKay S.J., Johnsen, R., Khattra, J., Asano, J., Baillie, D.L., Chan, S.,
Dube, N., Fang, L., Goszczynski, B., Ha, E., Halfnight, E., Hollebakken, R.,
Huang, P., Hung, K., Jensen, V., Jones, S.J.M., Kai, H., Li, D., Mah, A., Marra,
M., McGhee, J., Newbury, R., Pouzyrev, A., Riddle, D.L., Sonnhammer, E., Tian,
H., Tu, D., Tyson, J.R., Vatcher, G., Warner, A., Wong, K., Zhao, Z., Moerman,
D.G. (2003) Gene Expression Profiling of Cells, Tissues and Developmental Stages
of the Nematode C. elegans. Cold Spring Harbor Symposium LXVIII: The Genome of
Homo Sapiens, Cold Spring Harbor Press, Cold Spring Harbor, New York, Volume 68, pp.
159-170.
(Full Text) Johnsen, R.C., Baillie, D.L. (1997) Mutation, in C. elegans II Monograph 33,
Cold Spring Harbor Laboratory Press, Cold Spring Harbor, New York, USA, Chapter
4, pp.79-95. Edgley, M., Baillie, D.L., Riddle, D.L., Rose, M.L. (1995) Genetic balancers,
in Methods in Cell Biology, Vol. 48, Chapter 7, pp. 212-263. Rose, A.M., Edgley, M., Baillie, D.L. (1994) Genetic analysis of
Caenorhabditis elegans, in NATO Symposium on Plant Parasitic Nematodes, Ed.
Bird, D. and Lombardi, A. Advances in Molecular Plant Nematology, p. 19-33.
Waterston, R.H., Moerman, D.G., Baillie, D.L., Lane, T.R. (1982) Mutations
affecting myosin heavy chain accumulation and function in the nematode
Caenorhabditis elegans, in Disorders of the Motor Unit, Ed. D. L. Schotland.
John Wiley & Sons Ltd. pp 747-760. REVIEWS David de Pomerai, Piyush Madhamshettiwar, Charumathi Anbalagan, Matthew Loose,
Mainul Haque, John King, D. Kar Chowdhuri, Pradip Sinha, Bob Johnsen and David Baillie. (2009) The
stress-response network in animals: proposals to develop a predictive mathematical model. Open
Toxicology Journal. Volume 2, 71-76(Full Text) Baillie DL, Rose AM. 2000. WABA success: a tool for sequence comparison
between large genomes. Genome Res. 2000 Aug;10(8):1071-3.(Full
Text) Bird, D.M., C.H. Opperman, S.J.M. Jones, D.L. Baillie. 1999. The
Caenorhabditis Elegans Genome: A Guide in the Post Genomics Age. Annul.
Rev. Phytopathol. 37:247-65.
(Full Text) Heschl, M.F.P., Baillie, D.L. (1990) The hsp-70 multigene family of
Caenorhabditis elegans. Comp. Biochem. Physiol. 96B: 633-637.
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