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The VARCOMP Procedure

Negative Variance Component Estimates

The variance components estimated by PROC VARCOMP should theoretically be nonnegative because they are assumed to represent the variance of a random variable. Nevertheless, when you are using METHOD=MIVQUE0 (the default) or METHOD=TYPE1, some estimates of variance components may become negative. (Due to the nature of the algorithms used for METHOD=ML and METHOD=REML, negative estimates are constrained to zero.) These negative estimates may arise for a variety of reasons:

Assuming that you are satisfied that the model PROC VARCOMP is using is appropriate for your data, it is common practice to treat negative variance components as if they are zero.

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