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Frederic Pio Lab - Selected Publications - Pubmed Indexed Publications

  • Poon C, Mehot S, Morabi-Pazooki W, Pio F, Bennet A and Sen D. (2011) Guanine-rich RNAs and DNAs that bind hemin robustly catalyze oxygen transfer reactions J Am Chem Soc in press.

  • Tan PP, Dargahi D, and Pio F (2010) Predicting protein complexes by data integration of different types of interactions. Int. J. Computational Biology and Drug Design. 3:19-30

  • Tan PP, Dargahi D and Pio F (2009) Integrating different sources of data for structure determination of apoptotic protein complexes BIOCOMP09. Las Vegas, US.

  • Peng Y and Pio F (2008) Computational Detection of Transcriptional Regulatory Elements Controlling Protein Complexes in Apoptosis BIOCOMP08. Las Vegas, US.

  • Yan H, Dalal K, Hon BK, Youkharibache P, Lau D and Pio F (2008) RPA nucleic acid-binding properties of IFI16-HIN200. Biochim Biophys Acta. 1784:1087-97

  • Cooper DM, Thi EP, Chamberlain CM, Pio F and Lowenberger C. (2007) Aedes Dronc: a novel ecdysone-inducible caspase in the yellow fever mosquito, Aedes aegypti. Insect Mol Biol. 16:563-72

  • Cooper DM, Pio F, Thi EP, Theilmann D and Lowenberger C. (2007) Characterization of Aedes Dredd: a novel initiator caspase from the yellow fever mosquito, Aedes aegypti. Insect Biochem Mol Biol. 37:559-69

  • Dalal K and Pio F. (2006) Thermodynamics and stability of the PAAD/DAPIN/PYRIN domain of IFI-16. FEBS Lett. 580:3083-309

  • Shen W, Yun S, Tam B, Dalal K and Pio F. (2005) Target selection of soluble protein complexes for structural proteomics studies. Proteome Sci. 3:3

  • Bogan MJ, Agnes GR, Pio F and Cornell RB. (2005) Interdomain and membrane interactions of CTP:phosphocholine cytidylyltransferase revealed via limited proteolysis and mass spectrometry. J Biol Chem. 280:19613-24

  • Lett D, Hsing M and Pio F. (2004) Interaction profile-based protein classification of death domain. BMC Bioinformatics 5:75

  • Stehlik C, Hayashi H, Pio F, Godzik A and Reed JC. (2003) CARD6 is a modulator of NF-kappa B activation by Nod1- and Cardiak-mediated pathways. J Biol Chem. 278:31941-9

  • Damiano JS, Stehlik C, Pio F, Godzik A and Reed JC. (2001) CLAN, a novel human CED-4-like gene. Genomics 75:77-83

  • Pathan N, Marusawa H, Krajewska M, Matsuzawa S, Kim H, Okada K, Torii S, Kitada S, Krajewski S, Welsh K, Pio F, Godzik A and Reed JC. (2001) TUCAN, an antiapoptotic caspase-associated recruitment domain family protein overexpressed in cancer. J Biol Chem. 276:32220-9

  • Pawlowski K, Pio F, Chu Z, Reed JC and Godzik A. (2001) PAAD - a new protein domain associated with apoptosis, cancer and autoimmune diseases. Trends Biochem Sci. 26:85-7

  • Li W, Pio F, Pawlowski K and Godzik A. (2000) Saturated BLAST: an automated multiple intermediate sequence search used to detect distant homology. Bioinformatics 16:1105-10

  • Chu ZL, Pio F, Xie Z, Welsh K, Krajewska M, Krajewski S, Godzik A and Reed JC. (2001) A novel enhancer of the Apaf1 apoptosome involved in cytochrome c-dependent caspase activation and apoptosis. J Biol Chem. 276:9239-45 .

  • Pio F, Assa-Munt N, Yguerabide J and Maki RA. (1999) Mutants of ETS domain PU.1 and GGAA/T recognition: free energies and kinetics. Protein Sci. 10:2098-109

  • Anderson KL, Smith KA, Pio F, Torbett BE and Maki RA. (1998) Neutrophils deficient in PU.1 do not terminally differentiate or become functionally competent. Blood 92:1576-85

  • Pio F, Kodandapani R, Ni CZ, Shepard W, Klemsz M, McKercher SR, Maki RA and Ely KR. (1996) New insights on DNA recognition by ets proteins from the crystal structure of the PU.1 ETS domain-DNA complex. J Biol Chem. 271:23329-37

  • Lombardo A, Wang Y, Ni CZ, Dai X, Dickinson CD, Kodandapani R, Chiang S, White CA Pio F, Xuong NH, Hamlin RC, Ruoslahti E and Ely KR. (1996) Conformational flexibility and crystallization of tandemly linked type III modules of human fibronectin. Protein Sci. 5:1934-8.

  • Pio F*, Kodandapani R*, Ni CZ, Piccialli G, Klemsz M, McKercher S, Maki RA and Ely KR. (1996) A new pattern for helix-turn-helix recognition revealed by the PU.1 ETS-domain-DNA complex. Nature 380:456-60 *Equal contribution for both first authors

  • Pio F, Ni CZ, Mitchell RS, Knight J, McKercher S, Klemsz M, Lombardo A, Maki RA and Ely KR. (1995) Co-crystallization of an ETS domain (PU.1) in complex with DNA. Engineering the length of both protein and oligonucleotide. J Biol Chem. 270:24258-63

  • Khoo JC, Miller E, Pio F, Steinberg D and Witztum JL. (1992) Monoclonal antibodies against LDL further enhance macrophage uptake of LDL aggregates. Arterioscler Thromb. 12:1258-66

  • Scheerlinck JP, Lasters I, Claessens M, De Maeyer M and Pio F, Delhaise P and Wodak SJ. (1992) Recurrent alpha beta loop structures in TIM barrel motifs show a distinct pattern of conserved structural features. Proteins 12:299-313.

  • Lasters I, Wodak SJ and Pio F. (1990) The design of idealized alpha/beta-barrels: analysis of beta-sheet closure requirements. Proteins 7:249-56.

  • Wodak SJ, Lasters I, Pio F and Claessens M. (1990) Basic design features of the parallel alpha beta barrel, a ubiquitous protein-folding motif. Biochem Soc Symp. 57:99-121. Review.

  • Leroy A, Vu-Dac N, Theret N, Pio F and Fruchart JC. (1989) Expression, location and cross-reactivity of two antigenic sites on the amino terminal region of rabbit and human apolipoprotein A-I. Atherosclerosis Sept 79:9-19.

  • Pio F, De Loof H, Vu Dac N, Clavey V, Fruchart JC and Rosseneu M. (1988) Immunochemical characterization of two antigenic sites on human apolipoprotein A-I; localization and lipid modulation of these epitopes. Biochim Biophys Acta. 959:160-8.